miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|25746555|gb|BU296919.1|BU296919 GCGGCTCGAGCTGGGTTCCACGTGGTGCTTGTGGCAAGGGGCCGCACTACCAACGAGCAGGTGACAGGCAAGTTCCGAGG
TGGTGTCAACCCCTTCACTAATGGTTGCTGTAAGAATGTGAGCCGGGTCCTGTGTAGCTCTCCAGCCCCCAGGTACCTGG
GGCGCCCGAGGGCTGAGCAGACAGTGCTGGTGAGACCCCCCTTCCTGCGGCCCGAGGTGTCAGATGGCCAAATCACTGTC
AAGATCATGGACAACGGTATCCAGACAGAGCTGAAGAGGACGAAGTCCAAAGGAAGCCTGGAGGTGACGGAGAGCCAGTC
TGCTGATGCCGAACCGCCACCCCCACCTAAGCCAGACCTCAGCCGCTACACGGGCCTGAGGACACACTTAACCCTGGCCA
CCAATGAGGACAGCAGCTTGCTAGGCAAGGACAGCCCCCCGACACCCACCATGTACAAGTACCGGCCTGGATACAGCAGC
AGCAGCAGCTCAGCTGCCCTGCCCCATTCCACCAGCGCCAAGCTGAGCCGAGTGAACAGCCTGAAGGAGCCCAACTCCAT
CGGCGAGGGCGGCCGCAAGCCCAGCTACCGCTCAGAGCCGAGCCTGGAGCCTGAGAGCTTCCGCTCGCCCAAAAA




Most similar to sp|Q8VDZ4|ZDHC5_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8VDZ4|ZDHC5_MOUSE Probable palmitoyltransferase ZDHHC5 OS=Mus
           musculus GN=Zdhhc5 PE=1 SV=1
          Length = 715

 Score =  334 bits (856), Expect = 3e-91
 Identities = 166/210 (79%), Positives = 176/210 (83%)
 Frame = +1

Query: 1   AARAGFHVVLVARGRTTNEQVTGKFRGGVNPFTNGCCKNVSRVLCSSPAPRYLGRPRAEQ 180
           A   GFHVVLVARGRTTNEQVTGKFRGGVNPFTNGCC NVSRVLCSSPAPRYLGRP+ E+
Sbjct: 201 AGLTGFHVVLVARGRTTNEQVTGKFRGGVNPFTNGCCNNVSRVLCSSPAPRYLGRPKKEK 260

Query: 181 TVLVRPPFLRPEVSDGQITVKIMDNGIQTELKRTKSKGSLEVTESQSADAEXXXXXXXDL 360
           T+++RPPFLRPEVSDGQITVKIMDNGIQ EL+RTKSKGSLE+TESQSADAE       DL
Sbjct: 261 TIVIRPPFLRPEVSDGQITVKIMDNGIQGELRRTKSKGSLEITESQSADAEPPPPPKPDL 320

Query: 361 SRYTGLRTHLTLATNEDSSLLGKDSPPTPTMYKYRPGYXXXXXXXXXXXXXXXKLSRVNS 540
           SRYTGLRTHL+LATNEDSSLLGKDSPPTPTMYKYRPGY               KLSR +S
Sbjct: 321 SRYTGLRTHLSLATNEDSSLLGKDSPPTPTMYKYRPGYSSSSTSAAMPHSSSAKLSRGDS 380

Query: 541 LKEPNSIGEGGRKPSYRSEPSLEPESFRSP 630
           LKEP SI +  R PSYRSEPSLEPESFRSP
Sbjct: 381 LKEPTSIADSSRHPSYRSEPSLEPESFRSP 410